This website gives a demo of large-scale clustering in the Bioconductor using the DelayedArray framework. DelayedArray is like an ordinary array in R, but allows for the data to be in-memory, on-disk in a file, or even hosted on a remote server. Specifically, we present two forms of dimensionality reduction :
scrannormalization + PCA
Using these reduced dimensions, we present two types of clustering:
These packages are the focus of this workshop:
Please see the workshop
DESCRIPTION for a full list of dependencies.
This demo uses Bioconductor version 3.12. This is the current ‘release’ version of Bioconductor, which can be installed following these instructions.
You can then install the packages necessary for this workshop using the following: