# Books

### Genomics

- Orchestrating Single-Cell Analysis in Bioconductor. Online book that teaches users how to make use of cutting-edge Bioconductor tools to process, analyze, visualize, and explore single-cell RNA-seq data (scRNA-seq) data. Online companion for a manuscript published in
*Nature Methods*.- Authors: Robert Amezquita, Aaron Lun, Stephanie C. Hicks, Raphael Gottardo

### Data Science

- Tidyverse Skills for Data Science [Available on Leanpub] [Available via bookdown]. Online book that teaches users a powerful set of R packages known as the Tidyverse to learn the different aspects of the data science pipeline, from importing the data, tidying the data into a format that is easy to work with, exploring and visualizing the data, and fitting machine learning models. Online companion for the Tidyverse Skills for Data Science in R Specialization on Coursera.
- Authors: Shannon E. Ellis, Carrie Wright, Roger D. Peng and Stephanie C. Hicks

# Massive Open Online Courses (MOOCs)

### Tidyverse Skills for Data Science in R Specialization

This five course specialization series on Coursera allows learners to develop insights from data with tidy tools, such as data import, wrangle, visualize, and modeling data with the Tidyverse R packages. Instructors: Shannon E. Ellis, Carrie Wright, Roger D. Peng and Stephanie C. Hicks.

Coursera specialization: https://www.coursera.org/specializations/tidyverse-data-science-r/

- Introduction to the Tidyverse
- Importing data in the Tidyverse
- Wrangling data in the Tidyverse
- Visualizing data in the Tidyverse
- Modeling data in the Tidyverse

# Open Case Studies

The Open Case Studies (OCS) community resource of case studies that educators can use in the classroom to teach students how to effectively derive knowledge from data.

- Exploring global patterns of obesity across rural and urban regions
- Exploring global patterns of dietary behaviors associated with health risk
- Exploring CO2 emissions across time
- Opioids in United States
- Vaping Behaviors in American Youth
- Predicting Annual Air Pollution
- Influence of Multicollinearity on Measured Impact of Right-to-Carry Gun Laws
- Mental Health of American Youth
- Disparities in Youth Disconnection
- School Shootings in the United States
- Firearm Legislation and Fatal Police Shootings in the United States
- Exploring Health Expenditure using State-level data in the United States

# Teaching experience

### Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health

- 2021 |
**Instructor**, Statistical Computing (140.776) - 2021 |
**Co-instructor**, Advanced Data Science II (140.712) - 2019 |
**Co-instructor**, Advanced Data Science I and II (140.711, 140.712) - 2018 |
**Co-instructor**, Advanced Data Science I and II (140.711, 140.712)

### Department of Data Sciences, Dana-Farber Cancer Institute

### Department of Biostatistics, Harvard T.H. Chan School of Public Health

- 2016 |
**Co-instructor**, Introduction to Data Science (HSPH - BIO 260). - 2015 |
**Teaching Assistant**, Statistical Methods for Functional Genomics, Cold Spring Harbor Laboratories. - 2015 |
**Contributor and Discussion Leader**, Harvard edX- (1) Statistics and R for the Life Sciences (PH525.1x)
- (2) Case study: DNA methylation data analysis (PH525.8x)

- 2014 |
**Lead Teaching Fellow**, Data Science (CS109), Harvard University. Supervised and guided 25 teaching fellows with over 300 students in the course. All course material available on* github. - 2014 |
**Discussion Leader**, Data Analysis for Genomics (PH525x), Harvard edX.

### Department of Statistics, Rice University

- 2010, 2011 |
**Lead Teaching Assistant**, Probability in Bioinformatics and Genetics (STAT 423, 623). - 2010 |
**Lead Teaching Assistant**, Applied Stochastic Processes (STAT 552). - 2008, 2009 |
**Lab Instructor**, Introduction to Statistics for the Biosciences (STAT 305). - 2007, 2008 |
**Teaching Assistant**, Probability and Statistics (STAT 310).

### Louisiana State University

- 2005 - 2007 |
**Undergraduate tutor**, tutored college algebra, trigonometry and pre-calculus students in the Roadmap 2 Redesign Program - 2003 - 2004 |
**Undergraduate tutor**, tutored students at Scotlandville Magnet High School in algebra